sequence-alignments

Python library to facilitate genome assembly, annotation, and comparative genomics

SeqAn's official repository.

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

Inference of couplings in proteins and RNAs from sequence variation

Genome wide orthology inference and dNdS estimation

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

TREDPARSE: HLI Short Tandem Repeat (STR) caller

genomic alignment similarity search tool

Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics

Orthogonal Oligo Design for Fluorescence In Situ Hybridization (a.k.a. OOD-FISH)

This code is meant for educational purposes only! Sequence alignment in Python 3.x using Needleman–Wunsch algorithm. Reference code from TyMA (2017 - University of Málaga)

This is projects of Bioinformatics

A crate to manipulate multiple sequences alignments in Rust.

Outlier detection in multiple sequence alignment

Polymorphic Edge Detection - An efficient polymorphism detector for NGS data

subset and spaced seed design tool

Reliability Scoring and Masking of Multiple Sequence Alignments

A New Hyper-Heuristic Algorithm (FADSA) for Gene Sequence Assembly

ChromaZ is a cross-platform desktop C++/Qt6 application for contig assembly, Sanger sequencing chromatogram visualization, multiple sequence alignment, and bioinformatics analysis of nucleotide and amino acid sequences.