Repositories list

• sentieon-models

  Public
  Model files for Sentieon variant callers

  44 forks in Sentieon/sentieon-models•1717 stars in Sentieon/sentieon-models•00 issues in Sentieon/sentieon-models•00 pull requests in Sentieon/sentieon-models•Updated Oct 31, 2026Oct 31, 2026

• sentieon-cli

  Public
  A command-line interface for Sentieon pipelines

  Python

  •

  BSD 2-Clause "Simplified" License

  •77 forks in Sentieon/sentieon-cli•1717 stars in Sentieon/sentieon-cli•11 issue in Sentieon/sentieon-cli•00 pull requests in Sentieon/sentieon-cli•Updated Oct 31, 2026Oct 31, 2026

• KMC

  Public
  Fast and frugal disk based k-mer counter

  C++

  •8686 forks in Sentieon/KMC•00 stars in Sentieon/KMC•00 issues in Sentieon/KMC•00 pull requests in Sentieon/KMC•Updated Oct 27, 2026Oct 27, 2026

• cnv-visualization

  Public
  00 forks in Sentieon/cnv-visualization•00 stars in Sentieon/cnv-visualization•00 issues in Sentieon/cnv-visualization•00 pull requests in Sentieon/cnv-visualization•Updated Oct 17, 2026Oct 17, 2026

• sentieon-amazon-omics

  Public
  Sentieon pipelines for AWS HealthOmics

  WDL

  •

  BSD 2-Clause "Simplified" License

  •44 forks in Sentieon/sentieon-amazon-omics•88 stars in Sentieon/sentieon-amazon-omics•00 issues in Sentieon/sentieon-amazon-omics•00 pull requests in Sentieon/sentieon-amazon-omics•Updated Sep 1, 2026Sep 1, 2026

• terraform

  Public
  Terraform configuration files for the Sentieon software

  HCL

  •

  BSD 2-Clause "Simplified" License

  •22 forks in Sentieon/terraform•11 star in Sentieon/terraform•00 issues in Sentieon/terraform•00 pull requests in Sentieon/terraform•Updated Sep 1, 2026Sep 1, 2026

• sentieon-docker

  Public
  Example Dockerfiles for use with the Sentieon software

  dockerfilessentieonsentieon-docker

  dockerfilessentieonsentieon-docker

  Dockerfile

  •

  BSD 2-Clause "Simplified" License

  •66 forks in Sentieon/sentieon-docker•99 stars in Sentieon/sentieon-docker•00 issues in Sentieon/sentieon-docker•00 pull requests in Sentieon/sentieon-docker•Updated Sep 1, 2026Sep 1, 2026

• segdup-caller

  Public
  Specialized handling for difficult genes

  Python

  •

  BSD 2-Clause "Simplified" License

  •00 forks in Sentieon/segdup-caller•1212 stars in Sentieon/segdup-caller•00 issues in Sentieon/segdup-caller•00 pull requests in Sentieon/segdup-caller•Updated Jul 16, 2026Jul 16, 2026

• vcflib

  Public
  An open-source Python library for parsing and manipulation of VCF

  Python

  •

  BSD 2-Clause "Simplified" License

  •22 forks in Sentieon/vcflib•1010 stars in Sentieon/vcflib•00 issues in Sentieon/vcflib•00 pull requests in Sentieon/vcflib•Updated Apr 9, 2026Apr 9, 2026

• sentieon-scripts

  Public
  Helper scripts for biological data processing from Sentieon

  Shell

  •

  BSD 2-Clause "Simplified" License

  •2222 forks in Sentieon/sentieon-scripts•6565 stars in Sentieon/sentieon-scripts•22 issues in Sentieon/sentieon-scripts•00 pull requests in Sentieon/sentieon-scripts•Updated Apr 3, 2026Apr 3, 2026

• hap-eval

  Public
  A VCF comparison engine for structual variant benchmarking

  Python

  •

  BSD 2-Clause "Simplified" License

  •44 forks in Sentieon/hap-eval•2424 stars in Sentieon/hap-eval•44 issues in Sentieon/hap-eval•11 pull request in Sentieon/hap-eval•Updated Sep 26, 2025Sep 26, 2025

• sentieon-google-genomics

  Public archive
  Run Sentieon pipelines on Google Cloud Platform

  somatic-variantsgcpbioinformatics-pipeline+ 6

  somatic-variantsgcpbioinformatics-pipelinecloud-computingspeedupgenomic-data-analysisngs-pipelinegermline-variantssentieon

  Shell

  •

  BSD 2-Clause "Simplified" License

  •77 forks in Sentieon/sentieon-google-genomics•77 stars in Sentieon/sentieon-google-genomics•00 issues in Sentieon/sentieon-google-genomics•00 pull requests in Sentieon/sentieon-google-genomics•Updated Aug 4, 2025Aug 4, 2025

• sentieon-dnascope-ml

  Public
  Sentieon DNAscope + Machine Learning Model

  machine-learningnext-generation-sequencingdna+ 6

  machine-learningnext-generation-sequencingdnabioinformatics-pipelinevariant-callinggermline-variantssentieongenomics-datadnascope

  Shell

  •44 forks in Sentieon/sentieon-dnascope-ml•1212 stars in Sentieon/sentieon-dnascope-ml•11 issue in Sentieon/sentieon-dnascope-ml•00 pull requests in Sentieon/sentieon-dnascope-ml•Updated Mar 19, 2025Mar 19, 2025

• aws-benchmark-scripts

  Public
  Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on AWS EC2

  Python

  •33 forks in Sentieon/aws-benchmark-scripts•55 stars in Sentieon/aws-benchmark-scripts•00 issues in Sentieon/aws-benchmark-scripts•00 pull requests in Sentieon/aws-benchmark-scripts•Updated Jan 25, 2024Jan 25, 2024

• Sentieon-WDL

  Public
  WDL pipelines for the Sentieon tools

  wdl-workflowsentieonccdg+ 2

  wdl-workflowsentieonccdgfunctional-equivalent-pipelinefastq2vcf

  WDL

  •

  BSD 2-Clause "Simplified" License

  •22 forks in Sentieon/Sentieon-WDL•99 stars in Sentieon/Sentieon-WDL•00 issues in Sentieon/Sentieon-WDL•00 pull requests in Sentieon/Sentieon-WDL•Updated Dec 29, 2022Dec 29, 2022

• sentieon-matching-performance

  Public
  Accuracy and runtime benchmarks for the Sentieon GATK-matching tools

  Shell

  •

  BSD 2-Clause "Simplified" License

  •33 forks in Sentieon/sentieon-matching-performance•66 stars in Sentieon/sentieon-matching-performance•00 issues in Sentieon/sentieon-matching-performance•00 pull requests in Sentieon/sentieon-matching-performance•Updated Mar 19, 2021Mar 19, 2021

• sentieon-dnaseq

  Public archive
  Sentieon DNAseq

  accelerationgatkbioinformatics-pipeline+ 7

  accelerationgatkbioinformatics-pipelinevariant-callingdnaseqbwa-memdna-sequencingsentieongatk4genomics-data

  Shell

  •1515 forks in Sentieon/sentieon-dnaseq•2323 stars in Sentieon/sentieon-dnaseq•00 issues in Sentieon/sentieon-dnaseq•00 pull requests in Sentieon/sentieon-dnaseq•Updated Dec 30, 2020Dec 30, 2020

• Sentieon-cwl

  Public
  CWL pipelines for the Sentieon tools

  distributed-computingngs-pipelinesentieon+ 2

  distributed-computingngs-pipelinesentieoncwl-standardstoil-supports

  Common Workflow Language

  •

  BSD 2-Clause "Simplified" License

  •22 forks in Sentieon/Sentieon-cwl•44 stars in Sentieon/Sentieon-cwl•00 issues in Sentieon/Sentieon-cwl•00 pull requests in Sentieon/Sentieon-cwl•Updated Oct 22, 2018Oct 22, 2018

• toil

  Public
  A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

  Python

  •

  Apache License 2.0

  •246246 forks in Sentieon/toil•00 stars in Sentieon/toil•00 issues in Sentieon/toil•00 pull requests in Sentieon/toil•Updated Jun 12, 2018Jun 12, 2018