All pull requests

Pull requests

• Retry HDF5 opens on transient file-lock failures (fixes zoomify --balance -p N>1 on NFS)

  #488·treznicek opened Sep 3, 2026·

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• build(deps): bump actions/setup-python from 6 to 7

  dependenciesgithub_actions
  #484·dependabot[bot] opened Jul 20, 2026Bot·

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• docs: clarify cload pairs compression support

  #483·sapunyangkut opened Jul 13, 2026·

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• build(deps): bump actions/checkout from 6 to 7

  dependenciesgithub_actions
  #482·dependabot[bot] opened Jun 22, 2026Bot·

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• [pre-commit.ci] pre-commit autoupdate

  #481·pre-commit-ci[bot] opened Feb 9, 2026Bot·

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• Make weight column selectable in case of cooler show --balanced

  #472·dmalzl opened Aug 5, 2025·

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• Avoid double counting self-interactions with --ignore-diags 0

  #471·jpaggi opened Jul 28, 2025·

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• Fix blacklist BED file parsing in cooler balance CLI (Fixes #196)

  #462·ShigrafS opened Mar 16, 2025·

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• Add input validation for out-of-bounds column numbers in cload.py.

  #461·ShigrafS opened Mar 12, 2025·

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• Improve chromsizes File Validation to Catch Formatting Errors Early

  #458·ShigrafS opened Feb 26, 2025·

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• 451: Avoid Unnecessary Re-Creation of Bins in scool to Prevent File Bloat

  #457·Snowman-cpu opened Feb 20, 2025·

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• make parse_region 1-based

  #456·kloetzl opened Feb 16, 2025·

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• replace external "simplejson" backport from Py3 to Py3 with plain "json" module

  #454·a-detiste opened Jan 17, 2025Contributor·

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• Set multiprocessing start method explicitly through context

  #447·nvictus opened Dec 19, 2024Member·

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