All pull requests

Pull requests

• [batch] ubuntu worker disk image update

  #15861·cjllanwarne opened Oct 16, 2026Collaborator·1 task·

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  4

• [query] One reference genome attachment registry in emitted modules

  #15860·chrisvittal opened Oct 16, 2026Collaborator·21/21·

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  1

• [query] Key liftovers and reference sequences by reference genome value

  #15859·chrisvittal opened Oct 16, 2026Collaborator·20/21·

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  1

• [query] Builtin reference genomes cannot be removed or shadowed

  #15858·chrisvittal opened Oct 16, 2026Collaborator·19/21·

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  1

• [query] Fix init-arg and nesting bugs in agg/scan lifting

  #15855·ehigham opened Oct 16, 2026Member·

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  9

• [query] ExecuteContext holds its reference genomes as a ReferenceGenomeEnv

  #15854·chrisvittal opened Oct 16, 2026Collaborator·18/21·

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  1

• [query] Some cleanup after state manager removal

  #15852·chrisvittal opened Oct 15, 2026Collaborator·17/21·

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  1

• [query] Remove HailStateManager

  #15851·chrisvittal opened Oct 15, 2026Collaborator·16/21·

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  1

• [query] Unstaged readers and writers take no HailStateManager

  #15849·chrisvittal opened Oct 15, 2026Collaborator·15/21·

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  1

• [query] Orderings take no HailStateManager

  #15847·chrisvittal opened Oct 15, 2026Collaborator·14/21·

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  1

• [query] Locus types hold their reference genome

  #15846·chrisvittal opened Oct 15, 2026Collaborator·13/21·

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  1

• [query] Merge ReferenceGenomeLayout into ReferenceGenome

  #15845·chrisvittal opened Oct 15, 2026Collaborator·12/21·

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  1

• [query] Parse types against the reference genomes in scope

  #15844·chrisvittal opened Oct 15, 2026Collaborator·11/21·

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  1

• [query] Sequences and Liftovers now live on the ExecuteContext

  #15843·chrisvittal opened Oct 15, 2026Collaborator·10/21·

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  1

• [query] Ship builtin reference genomes to tasks as a tag

  #15842·chrisvittal opened Oct 14, 2026Collaborator·9/21·

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  1

• [benchmark] Add JMH Benchmarks for per-locus ops timings/costs

  #15841·chrisvittal opened Oct 14, 2026Collaborator·8/21·

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  1

• [agents] update flaky test runbook and link it from the hail-batch-dev skill

  prio:low
  #15840·cjllanwarne opened Oct 14, 2026Collaborator·1 task·

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  13

• [agents] fixes to hail-batch-dev skill

  prio:low
  #15839·cjllanwarne opened Oct 14, 2026Collaborator·1 task·

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  3

• [services] update safe-to-evict settings on some pods

  #15837·cjllanwarne opened Oct 14, 2026Collaborator·1 task·

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  1

• [query] Cache the last contig index for canonical loci

  #15834·chrisvittal opened Oct 13, 2026Collaborator·7/21·

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  1

• [benchmark] Add locus benchmarks and key native fixtures on unstable encodings

  #15833·chrisvittal opened Oct 13, 2026Collaborator·6/21·

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  1

• kchandra aws create user

  #15832·kush-chandra opened Oct 13, 2026Contributor·8/8·1 task·

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  1

• kchandra aws deploy

  #15831·kush-chandra opened Oct 13, 2026Contributor·7/8·1 task·

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  1

• [aws] Add IAM roles for Kubernetes service accounts

  #15828·kush-chandra opened Oct 13, 2026Contributor·6/8·1 task·

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  1

• [query] set a reasonable default HAIL_TEST_STORAGE_URI in notebook test

  #15826·chrisvittal opened Oct 12, 2026Collaborator·

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  1