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dev-python/pyfaidx: version bump 0.9.1.1; py3.15 compat; fix tests #1413

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mschubert wants to merge 1 commit into from
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dev-python/pyfaidx: version bump 0.9.1.1; py3.15 compat; fix tests #1413

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2 changes: 1 addition & 1 deletion dev-python/pyfaidx/Manifest
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DIST pyfaidx-0.9.0.4.tar.gz 71759 BLAKE2B c81c39180d1e6624e2d75ab7c343b4824a673d6a8c61274ad4a0835a75f2ee49421e624304ea740e39b3bcc0256bce46ef60892151d5cdd317fd588f46f49e3a SHA512 98249b0f8c5caef87af6a41debff681c1c55be60edfbe78ad328105dfb00cdef762a83df9552355282968efda13cca3e98090bc41d2da8a80b4263e9e65affc1
DIST pyfaidx-0.9.1.1.gh.tar.gz 64537 BLAKE2B b590fd2a0bedb5e19e08728a27293edd8c224ea2e02176a0384e2921b5db2d46d2b61226607f972a7f77cf5366f3ec19792f1e3df2b06cac5e66acb5c6aa48c0 SHA512 f9251f5ceb9d533f7fa46826d872b909efe3b1b2d692012cfbb872d5378fc307807a4583efab070077c90ab33002ea01b6534fb0e7847fc7c5580d5a1b4e6976
28 changes: 0 additions & 28 deletions dev-python/pyfaidx/pyfaidx-0.9.0.4.ebuild
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40 changes: 40 additions & 0 deletions dev-python/pyfaidx/pyfaidx-0.9.1.1.ebuild
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# Copyright 1999-2026 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=8

DISTUTILS_USE_PEP517=setuptools
PYTHON_COMPAT=( python3_{12..15} )
export SETUPTOOLS_SCM_PRETEND_VERSION=${PV}

inherit distutils-r1

DESCRIPTION="Efficient pythonic random access to fasta subsequences"
HOMEPAGE="
https://github.com/mdshw5/pyfaidx
https://pypi.org/project/pyfaidx/
"
SRC_URI="https://github.com/mdshw5/pyfaidx/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"

LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"

RDEPEND="dev-python/packaging[${PYTHON_USEDEP}]"
BDEPEND="dev-python/setuptools-scm[${PYTHON_USEDEP}]"

EPYTEST_PLUGINS=()
distutils_enable_tests pytest

python_test() {
# The remaining tests require genome data downloaded separately by upstream
epytest -o addopts= \
tests/test_bed_non_data.py \
tests/test_bgzfblock.py \
'tests/test_faidx.py::test_faidx_cli_transform_chromsizes[False]' \
tests/test_feature_comments.py \
tests/test_feature_spliced_seq.py \
tests/test_long_fasta_entry.py \
tests/test_sequence_class.py \
tests/test_wrap_sequence_newline.py
}
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