Issues

• Add documentation to tem_tutorial.ipynb for simSPI/path_config.yaml

  documentation
  compSPI/simSPI#131 · Filter by author geoffwoollard opened on Jun 24, 2022
  3

  

• Reduce the boilerplate code in test_notebooks.py

  compSPI/simSPI#130 · Filter by author bogdantoader opened on May 12, 2022
  1

  

• Remove .pbd data that takes up space and download on the fly from osf for tests and notebooks

  compSPI/simSPI#129 · Filter by author ninamiolane opened on May 12, 2022

• Add Colab links to notebooks

  compSPI/simSPI#128 · Filter by author ninamiolane opened on May 12, 2022

• Remove dryrun test - speedup

  compSPI/simSPI#126 · Filter by author fredericpoitevin opened on May 11, 2022
  

• Projection tests?

  compSPI/simSPI#123 · Filter by author lederman opened on May 10, 2022

• Some tests fail locally because of the "/work/" absolute path

  compSPI/simSPI#120 · Filter by author bogdantoader opened on May 7, 2022
  1

  

• Change config to linear simulator: from pickle to yml

  compSPI/simSPI#118 · Filter by author ninamiolane opened on May 6, 2022

• Make general latent space distribution metadata parser generator

  bug
  compSPI/simSPI#115 · Filter by author sonyahanson opened on May 6, 2022

• Implement a tomographic backprojection module

  compSPI/simSPI#111 · Filter by author fredericpoitevin opened on May 6, 2022

• Simulate spliceosomes' micrographs with the TEM simulator

  compSPI/simSPI#110 · Filter by author ninamiolane opened on May 4, 2022 · PIMS - Hackathon
  

• Simulate ribosomes' micrographs with the TEM simulator

  compSPI/simSPI#109 · Filter by author ninamiolane opened on May 4, 2022 · PIMS - Hackathon

• Simulate Gaba-B proteins' micrographs with the TEM simulator

  compSPI/simSPI#108 · Filter by author ninamiolane opened on May 4, 2022 · PIMS - Hackathon

• Write a notebook that simulates cryoEM images with the linear simulator

  compSPI/simSPI#107 · Filter by author ninamiolane opened on May 4, 2022 · PIMS - Hackathon
  

• Organize simSPI's notebooks

  compSPI/simSPI#105 · Filter by author ninamiolane opened on May 2, 2022 · PIMS - Hackathon
  5

  

• Implement new noise models

  compSPI/simSPI#104 · Filter by author ninamiolane opened on Apr 29, 2022 · PIMS - Hackathon

• Implement Shift in Image Space (Translation)

  compSPI/simSPI#103 · Filter by author ninamiolane opened on Apr 29, 2022 · PIMS - Hackathon
  1

• Implement Projector in Fourier Space (Slicing)

  compSPI/simSPI#102 · Filter by author ninamiolane opened on Apr 29, 2022 · PIMS - Hackathon
  1

  

• Building simSPI container workflow fails due to size limit.

  compSPI/simSPI#98 · Filter by author fredericpoitevin opened on Apr 6, 2022
  2

  

• TEM Simulator docs on Euler angle convention

  documentation
  compSPI/simSPI#97 · Filter by author geoffwoollard opened on Apr 6, 2022

• Improve containerization experience

  bug
  compSPI/simSPI#93 · Filter by author fredericpoitevin opened on Mar 25, 2022
  

• TEMsimulator output format compatibility

  enhancement
  compSPI/simSPI#90 · Filter by author fredericpoitevin opened on Mar 18, 2022
  1

• Add some log information when processes are running

  enhancement
  compSPI/simSPI#89 · Filter by author fredericpoitevin opened on Mar 18, 2022

• TEM : Refactor "no of samples/microgaphs" to "no of particles"

  enhancement
  compSPI/simSPI#88 · Filter by author arjunsingh3600 opened on Mar 18, 2022

• Docker image fails to update configuration files (.yaml) on push, workaround needed.

  compSPI/simSPI#84 · Filter by author calhep opened on Mar 10, 2022
  3