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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

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The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    πŸ“Š A universal enrichment tool for interpreting omics data

    R 1.2k 267

  2. ggtree ggtree Public

    πŸŽ„Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    πŸ€– A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    TypeScript 33 10

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 143 repositories
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 19, 2026
  • Rho-plugins Public

    Official scientific plugins and native runtime implementations for Rho

    YuLab-SMU/Rho-plugins's past year of commit activity
    TypeScript 0 AGPL-3.0 0 0 0 Updated Oct 19, 2026
  • sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    YuLab-SMU/sclet's past year of commit activity
    R 24 8 1 0 Updated Oct 19, 2026
  • Rho Public

    an agent-native desktop workbench for R

    YuLab-SMU/Rho's past year of commit activity
    TypeScript 33 AGPL-3.0 10 15 2 Updated Oct 19, 2026
  • plotbb Public

    πŸ–ŒοΈ Grammar of Graphics on β€˜base’ Graphics

    YuLab-SMU/plotbb's past year of commit activity
    R 52 7 0 0 Updated Oct 18, 2026
  • clusterProfiler Public

    πŸ“Š A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler's past year of commit activity
    R 1,243 267 251 0 Updated Oct 18, 2026
  • biomedical-knowledge-mining-book Public

    πŸ“– Biomedical knowledge mining using GOSemSim and clusterProfiler

    YuLab-SMU/biomedical-knowledge-mining-book's past year of commit activity
    R 96 30 0 0 Updated Oct 18, 2026
  • aplot Public

    Decorate a plot with associated information

    YuLab-SMU/aplot's past year of commit activity
    R 131 17 5 0 Updated Oct 18, 2026
  • enrichit Public

    C++ Implementations of Functional Enrichment Analysis

    YuLab-SMU/enrichit's past year of commit activity
    R 4 5 0 0 Updated Oct 18, 2026
  • treedata-book-2ed Public

    πŸ“– Data Integration, Manipulation and Visualization of Phylogenetic Trees

    YuLab-SMU/treedata-book-2ed's past year of commit activity
    HTML 0 1 0 0 Updated Oct 18, 2026