Issues

• Switch to python3?

  OpenGene/AfterQC#48 · Filter by author serge2016 opened on Aug 26, 2026

• Follow-up assembly issues

  OpenGene/AfterQC#47 · Filter by author baizhantianyu opened on Jun 24, 2025

• My bioconda install Python version

  OpenGene/AfterQC#45 · Filter by author RichardBJ opened on Nov 1, 2022

• bubble

  OpenGene/AfterQC#44 · Filter by author yinbinqiu opened on Sep 29, 2022

• String index out of range.

  OpenGene/AfterQC#43 · Filter by author m-quijano opened on Jan 12, 2022
  1

• Remove overrepresented sequences

  OpenGene/AfterQC#42 · Filter by author manuelsmendoza opened on Aug 20, 2020

• Error despite creating env with 2.7 in conda

  OpenGene/AfterQC#41 · Filter by author sankadinesh opened on May 31, 2020

• AfterQC in FASTQ joined

  OpenGene/AfterQC#39 · Filter by author fabianomenegidio opened on Jan 29, 2019

• AfterQC total bases calculation

  OpenGene/AfterQC#37 · Filter by author pbravakos opened on Jul 4, 2018
  1

• question about AfterQC/preprocesser.py

  OpenGene/AfterQC#36 · Filter by author emojinchuan opened on Jun 19, 2018

• Read length distributon after processing

  OpenGene/AfterQC#35 · Filter by author coolmak32 opened on Mar 9, 2018
  7

• Issue with overlap analysis

  OpenGene/AfterQC#34 · Filter by author ghost opened on Feb 20, 2018
  4

• Afterqc with pypy

  OpenGene/AfterQC#33 · Filter by author coolmak32 opened on Feb 4, 2018
  3

• output files are truncated

  OpenGene/AfterQC#30 · Filter by author hhg7 opened on Dec 7, 2017

• Report

  OpenGene/AfterQC#29 · Filter by author ukf-hoppmann opened on Nov 21, 2017

• AterQc

  OpenGene/AfterQC#28 · Filter by author coolmak32 opened on Oct 22, 2017
  2

• ValueError: max() arg is an empty sequence

  OpenGene/AfterQC#27 · Filter by author hovans opened on Oct 10, 2017
  3

• output gzipped data

  OpenGene/AfterQC#26 · Filter by author tao-bioinfo opened on Oct 7, 2017
  3

• Tool to keep reads where all bases are above a specific quality score.

  OpenGene/AfterQC#25 · Filter by author max0479 opened on Oct 4, 2017
  2

• Removal of PCR/RNA primers

  enhancement
  OpenGene/AfterQC#24 · Filter by author AmaliT opened on Sep 12, 2017
  1

• Wrong (low quality) bases in overlapped regions failed to be corrected

  OpenGene/AfterQC#22 · Filter by author drna opened on Jul 19, 2017
  4

• 1) AfterQC is slow 2)Aggregate results from many samples into a single report

  OpenGene/AfterQC#18 · Filter by author gk-bioin4m8x opened on May 18, 2017
  18

• Adapters trimming

  OpenGene/AfterQC#16 · Filter by author alnf opened on May 2, 2017
  10

• Pack (gzip) output good and bad reads

  OpenGene/AfterQC#14 · Filter by author serge2016 opened on Mar 20, 2017
  4

• Parallel mode for one pair of reads

  OpenGene/AfterQC#13 · Filter by author serge2016 opened on Mar 20, 2017